Does it pay to pay? A comparison of the benefits of open-access publishing across various sub-fields in biology.

Authors are often faced with the decision of whether to maximize traditional impact metrics or minimize costs when choosing where to publish the results of their research. Many subscription-based journals now offer the option of paying an article processing charge (APC) to make their work open. Though such "hybrid" journals make research more accessible to readers, their APCs often come with high price tags and can exclude authors who lack the capacity to pay to make their research accessible. Here, we tested if paying to publish open access in a subscription-based journal benefited authors by conferring more citations relative to closed access articles. We identified 146,415 articles published in 152 hybrid journals in the field of biology from 2013-2018 to compare the number of citations between various types of open access and closed access articles. In a simple generalized linear model analysis of our full dataset, we found that publishing open access in hybrid journals that offer the option confers an average citation advantage to authors of 17.8 citations compared to closed access articles in similar journals. After taking into account the number of authors, Journal Citation Reports 2020 Quartile, year of publication, and Web of Science category, we still found that open access generated significantly more citations than closed access (p < 0.0001). However, results were complex, with exact differences in citation rates among access types impacted by these other variables. This citation advantage based on access type was even similar when comparing open and closed access articles published in the same issue of a journal (p < 0.0001). However, by examining articles where the authors paid an article processing charge, we found that cost itself was not predictive of citation rates (p = 0.14). Based on our findings of access type and other model parameters, we suggest that, in the case of the 152 journals we analyzed, paying for open access does confer a citation advantage. For authors with limited budgets, we recommend pursuing open access alternatives that do not require paying a fee as they still yielded more citations than closed access. For authors who are considering where to submit their next article, we offer additional suggestions on how to balance exposure via citations with publishing costs.

Research on Space Occupancy, Activity Rhythm and Sexual Segregation of White-Lipped Deer (Cervus albirostris) in Forest Habitats of Jiacha Gorge on Yarlung Zangbo River Basin Based on Infrared Camera Technology.

The white-lipped deer (Cervus albirostris) is a rare and endangered species found in the Qinghai-Tibet Plateau in China. To understand the space occupancy, activity rhythm, and sexual segregation of the white-lipped deer, 24,096 effective photos and 827 effective videos were captured using infrared cameras from February 2020 to January 2022. The ecology and behavior of the white-lipped deer in Jiacha Gorge were studied in more detail using site occupancy models, relative abundance index, and other technologies and methods. The results show that The occupancy predicted by the model exceeds or approaches 0.5. The occupancy increases with greater altitude and with larger EVI values, while the detection rate increases with altitude only during spring and decreases with EVI values only in summer. The daily activity peaks for white-lipped deer were observed from 7:00 to 11:00 and 17:00 to 22:00, with annual activity peaks occurring from April to June and from September to November. From July to the following January, white-lipped deer mostly move in mixed-sex groups, while during the remainder of the year, they predominantly associate with individuals of the same sex. Climate, vegetation coverage, food resources, and human disturbance collectively influenced the behavior and habitat utilization of white-lipped deer. The foundational research conducted on white-lipped deer over the past two years is expected to enhance the basic understanding of white-lipped deer in the Qinghai-Tibet Plateau and contribute to future protection and management decisions.

Dispersal patterns in Yunnan snub-nosed monkeys.

Sex-biased dispersal is common in group-living animals. Due to differences in local demographic and environmental factors, sex-biased dispersal presents many irregular patterns. In this study, a habituated, individually identified Yunnan snub-nosed monkey Rhinopithecus bieti group was observed over 9 years; 192 dispersal events, including 97 male dispersal events (25 natal dispersal and 72 secondary dispersal) and 95 female dispersal events (34 natal dispersal and 61 secondary dispersal) were observed. Males and females showed different dispersal paths, dispersal ages, and dispersal patterns. Females had 2 dispersal paths, whereas males had 4 paths. In terms of age of dispersal, the male age of natal dispersal was younger than for females. Males prefer single dispersal, whereas females prefer parallel dispersal. Our study indicates that the dispersal pattern of R. bieti should be classified as a bisexual dispersal pattern. The differences in dispersal path, average age at dispersal, and dispersal path pattern indicate that Yunnan snub-nosed monkeys may still retain a loose matrilineal social system.

Effects of human activity on the habitat utilization of Himalayan marmot (Marmota himalayana) in Zoige wetland.

Human activity is increasingly and persistently disturbing nature and wild animals. Affected wildlife adopts multiple strategies to deal with different human influences. To explore the effect of human activity on habitat utilization of Himalayan marmot (Marmota himalayana), habitat utilization patterns of three neighboring marmot populations in habitats affected differently by human activities were recorded and compared. We found that (a) distance between reproductive burrows (a represent of reproductive pairs) becomes shorter under the influence of human activities, and more burrows were dug as temporary shelters, resulting in shorter distance between those shelters and shorter distance flee to those shelters and, consequently, shorter flight initiation distance when threatened. More burrows that are closer to the disturbed habitats improve the ability to escape from threats. (b) Reproductive burrow site selection of the species is determined by the availability of mounds in the habitat, and breeding pairs selectively build reproductive (also the hibernation) burrows on mounds, potentially to improve surveillance when basking and the drainage of burrows. Human activities generally drive breeding pairs away from the road to dig their reproductive burrows likely to reduce disturbance from vehicles. However, even heavy human activity exerts no pressure on the distance of reproductive burrows from the road or the mound volume of the high disturbance population, potentially because mounds are the best burrowing site to reproduce and hibernate in the habitat. Marmots deal with disturbance by digging more burrows in the habitat to flee more effectively and building reproductive burrows on mounds to gain better vigilance and drainage efficiency.

Reproductive Parameters of Wild Rhinopithecus bieti.

Animal life activities are rhythmic and affected by seasonal periodicity. Based on 9 years of observations, we estimated the reproductive parameters of a wild, but provisioned Yunnan snub-nosed monkey (Rhinopithecus bieti) group at Xiangguqing in Baimaxueshan National Nature Reserve, Yunnan Province, China. We observed 84 infants (43 males and 41 females) from 41 females between 2010 and 2018. We found the birth sex ratio was 1:1, the female age at first birth was 6.13 years and infant mortality was about 15.5%. Nine years of data showed that the maximum birth season lasted 126 days, and the average length per year was 98.57 ± 18.71 days. R. bieti,characterized by strictly seasonal reproduction, started giving birth on February 1, and this ended on June 7, with a peak reached from March 4 to March 11 (10th week). The mean birth date was March 20 (79.21 ± 29.54 days), and the median birth date was March 11 (71st day). The mean interbirth interval (IBI) was approximately 2 years, and the IBIs among females whose infants had survived for 1 year were found to be significantly longer than those found in females who lost their infant within 1 year. Comparing the reproduction parameters among Asian and African colobines, we concluded that Asian and African colobines tend to have an IBI of 2 years or more, females tend to give birth at the age of 5-6 years, Rhinopithecus species had a strict seasonal reproductive pattern concentrated in February to April. Seasonal changes in food resources and climatic factors may be the main reasons for the variation in reproductive parameters in intraspecific and interspecific comparisons of Asian and African colobines.

Proximate causes of dispersal for female Yunnan snub-nosed monkeys.

Individual dispersal trends, unquestionably important for species ecology and evolution, are affected by multiple factors. Understanding the factors that influence female dispersal strategies offers important insight into primate dispersal mechanisms and female choice. To investigate the proximate causes of dispersal in female Yunnan snub-nosed monkeys (Rhinopithecus bieti), we observed and analyzed nine years of detailed dispersal and demographic data from a population of R. bieti in Xiangguqing, Baimaxueshan Nature Reserve, Yunnan Province, China. Results showed that females who lived long-term in a one-male unit (OMU), without giving birth and with few or no relatives, were more likely to leave that OMU. In addition, an OMU led by an outgroup male and containing more female relatives was significantly more likely to be chosen for immigration. Conversely, greater male age, longer male tenure, and more potentially fertile females discouraged immigration into an OMU. These results suggest that reproduction, male quality, and kin cooperation play the largest roles in female Yunnan snub-nosed monkey dispersal.

Geographic body size variation of a tropical anuran: effects of water deficit and precipitation seasonality on Asian common toad from southern Asia.

BACKGROUND: Two previous studies on interspecific body size variation of anurans found that the key drivers of variation are the species' lifestyles and the environments that they live in. To examine whether those findings apply at the intraspecific level, we conducted a study of the Asian common toad (Duttaphrynus melanostictus), a terrestrial anuran distributed in tropical regions. The body size of toads from 15 locations, covering the majority of their geographic range, and local environmental data were summarized from published literature. We used a model selection process based on an information-theoretic approach to examine the relationship between toad body size and those environmental parameters. RESULTS: We found a positive correlation between the body size of the Asian common toad and the water deficit gradient, but no linkage between body size and temperature-related parameters. Furthermore, there was a positive correlation between the seasonality of precipitation and body size of females from different sampled populations. CONCLUSIONS: As a terrestrial anuran, the Asian common toad should experience greater pressure from environmental fluctuations than aquatic species. It is mainly distributed in tropical regions where temperatures are generally warm and stable, but water availability fluctuates. Therefore, while thermal gradients are not strong enough to generate selection pressure on body size, the moisture gradient is strong enough to select for larger size in both males and females in dryer regions. Larger body size supports more efficient water conservation, a pattern in accordance with the prediction that lifestyles of different species and their local habitats determine the relationship between body size and environment. In addition, larger females occur in regions with greater seasonality in precipitation, which may happen because larger females can afford greater reproductive output in a limited reproductive season.

Behavioural Responses of Yunnan Snub-Nosed Monkeys (Rhinopithecus bieti) to Tourists in a Provisioned Monkey Group in Baimaxueshan Nature Reserve.

The appearance of tourists brings about behavioural changes in some primates. Primate behavioural responses to human activities can reflect their survival strategy. Little is known about how the behaviour of Rhinopithecus bieti changes in the presence of tourists. Here we provide the first detailed description of interactions between a provisioned group of R. bieti and tourists at Xiangguqing in Baimaxueshan Nature Reserve from July 2012 to June 2013. We found that R. bieti had different response rates to the 5 most common human actions (shout, photograph, offer food, clap, and wave). Results indicated that R. bieti expresses 10 behavioural reactions (threat, escape, vigilance, warning, panic, alliance, attack, foraging, approach, and staring) to tourists' actions. On the whole, most of the monkeys' responses were unfriendly or hostile; a small number were neutral and affiliative. Behavioural responses were also significantly different among the different age/sex classes. Immature individuals engaged in more affiliative behaviours than adult individuals, and adult males tended towards more hostile behaviours. The behaviour of R. bieti towards tourists showed both tension and adaptability. Scientific management of provisioned monkey groups and strict regulation of tourist behaviour is needed in order to protect the animals from the negative effects of tourism-related disturbance.

Phylogenetic studies of Petaurista petauri based on complete mitochondrial DNA sequences.

The giant flying squirrel Petaurista petauri is a large rodent studied by few researchers. Here, we sequenced the complete mitochondrial genome of P. petauri. Similar to the typical vertebrate mitochondrial genome, the mtDNA of P. petauri also contained 37 genes (13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes) and a noncoding region (D-loop). We also analyzed the phylogenetic relationship of P. Petauri to 14 other closely related species using the Bayesian inference. This work will contribute to our understanding of this species' evolution and conservation.

Forest seasonality shapes diet of limestone-living rhesus macaques at Nonggang, China.

Limestone forests are an unusual habitat for primates, but little information is available for the genus Macaca in such habitats, making a comparative understanding of extant limestone primates' behavioral adaptation incomplete. We collected data on the diet of rhesus macaques (Macaca mulatta) in a limestone habitat at Nonggang Nature Reserve, southwestern Guangxi, China, and examined the effects of forest seasonality on their diet. Our results indicated that a total of 114 species of plants are consumed by macaques. Young leaves are a preferred food, accounting for 48.9 and 56.9% of the overall diets. One group significantly increased young leaf consumption in response to availability. Fruits contributed to only 27.3 and 28.7% of overall diet. The macaque diet varied according to season. They fed on more fruits in the rainy season. Consumption of mature leaves increased when the availability of young leaves and fruits declined in the dry season, indicating that mature leaves are a fallback food for macaques in a limestone habitat. Similar to sympatric Assamese macaques, Bonia saxatilis, a shrubby, karst-endemic bamboo was consumed by rhesus macaques throughout the year, and was the top food species through most of the year, suggesting that bamboo consumption represents a key factor in the macaque's dietary adaptation to limestone habitat.

Differences in the activity budgets of Yunnan snub-nosed monkeys (Rhinopithecus bieti) by age-sex class at Xiangguqing in Baimaxueshan Nature Reserve, China.

The activity budgets of primates reflect their survival strategy. Despite existing data on the activity budgets of Yunnan snub-nosed monkeys (Rhinopithecus bieti), little is known about how activity budgets vary between age-sex classes. This study provides the first detailed activity budgets subdivided by age-sex class, based on observations of the largest habituated group of R. bieti at Xiangguqing in Baimaxueshan Nature Reserve. This study was conducted from June 2008 to May 2009. We found that adult females spent more time feeding (44.8%) than adult males (39.5%), juveniles (39.1%) and infants (14.2%). Females allocated significantly more time to feeding than to any other activity. Adult males allocated more time to miscellaneous activities (12.5%) than adult females (3.8%). Juveniles allocated less time to grooming than adults. Infants were being groomed 6.9% of the time, the highest proportion among all age-sex classes. Adults spent more time feeding, while immature individuals allocated more time to moving and other activities. There are several reasons why activity budgets can vary by age-sex class: (1) differential reproductive investment between males and females; (2) developmental differences among the age categories, and (3) social relationships between members of different age-sex classes, particularly dominance. These variations in activity budgets among the different age-sex classes may become a selective pressure in this species.

Niche separation of sympatric macaques, Macaca assamensis and M. mulatta, in limestone habitats of Nonggang, China.

Comparative studies of sympatric species are essential in understanding those species' behavioral and ecological adaptations as well as the mechanisms that can reduce resource competition enough to allow coexistence. We collected data on diet, activity budget and habitat use from two sympatric macaque species, the Assamese macaque (Macaca assamensis) and the rhesus macaque (M. mulatta), in a limestone seasonal rainforest of Nonggang Nature Reserve, southwestern Guangxi, China. Our results show that the two sympatric macaques differ in diet, activity budget, and habitat use: (1) out of the 131 plant species that were used by both macaque species as food over the year, only 15 plant species (11 %) were shared. Rhesus macaques used more plant species as major foods, and had higher dietary diversity and evenness indexes than Assamese macaques. (2) Assamese macaques fed predominantly on leaves, whereas rhesus macaques fed more selectively on fruits. The rhesus macaques' diet varied according to season, and was significantly correlated to season fluctuation in fruit availability. (3) Assamese macaques devoted more time to resting, and less time to feeding than rhesus macaques (4) Assamese macaques were present mostly on the cliff, and tended to stay on the ground, whereas rhesus macaques were present mostly on the hillside, and showed preference to lower and middle canopy. The observed differences in diet and habitat use between the two macaque species represent behavioral patterns enabling their coexistence.